Installation

Dependencies

• gcc 8.5.0 or newer

• htslib 1.15 or newer

• libdeflate 1.12 or newer

Compilation

git clone https://github.com/RabbitBio/RabbitBAM
cd RabbitBAM
bash configure.sh <path-to-htslib-installation-directory> <path-to-libdeflate-installation-directory>
source env.sh
make clean && make

Test

Run the following command to check whether RabbitBAM was installed successfully:

./rabbitbam -h